HL_7Q4K_114
3D structure
- PDB id
- 7Q4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- A(PSU)UGAAAA(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7Q4K_114 not in the Motif Atlas
- Homologous match to HL_5E7K_237
- Geometric discrepancy: 0.3842
- The information below is about HL_5E7K_237
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7Q4K|1|D3|A|31
7Q4K|1|D3|PSU|32
7Q4K|1|D3|U|33
7Q4K|1|D3|G|34
7Q4K|1|D3|A|35
7Q4K|1|D3|A|36
7Q4K|1|D3|A|37
7Q4K|1|D3|A|38
7Q4K|1|D3|PSU|39
Current chains
- Chain D3
- Phe-tRNA (E site)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain D2
- Transfer RNA; tRNA
- Chain D4
- MsrDL mRNA
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