HL_7QGN_071

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

7QGN|1|N|U|1325, 7QGN|1|N|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGN_071 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1218

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7QGN|1|N|G|1324
7QGN|1|N|U|1325
7QGN|1|N|U|1326
7QGN|1|N|A|1327
7QGN|1|N|A|1328
7QGN|1|N|U|1329
7QGN|1|N|C|1330

Current chains

Chain N

23S rRNA

Nearby chains

Chain a

Ribosomal protein L17

Chain f

50S ribosomal protein L22

Chain s

VemP nascent chain