HL_7QGN_106

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7QGN|1|N|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGN_106 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0646

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7QGN|1|N|G|2819
7QGN|1|N|A|2820
7QGN|1|N|A|2821
7QGN|1|N|G|2822
7QGN|1|N|A|2823
7QGN|1|N|C|2824
7QGN|1|N|G|2825
7QGN|1|N|A|2826
7QGN|1|N|C|2827

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain a

Ribosomal protein L17