HL_7QI4_054

3D structure

PDB id

7QI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome at 2.2 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

7QI4|1|AA|A|1283, 7QI4|1|AA|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QI4_054 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2923

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7QI4|1|AA|U|1281
7QI4|1|AA|G|1282
7QI4|1|AA|A|1283
7QI4|1|AA|U|1284
7QI4|1|AA|G|1285
7QI4|1|AA|A|1286
7QI4|1|AA|A|1287

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AB

28S ribosomal protein S2, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AS

28S ribosomal protein S23, mitochondrial