HL_7QP7_010

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7QP7|1|A|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP7_010 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.127

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7QP7|1|A|C|462
7QP7|1|A|C|463
7QP7|1|A|A|464
7QP7|1|A|A|465
7QP7|1|A|G|466
7QP7|1|A|G|467

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6