HL_7QP7_013

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QP7_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1451

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7QP7|1|A|A|569
7QP7|1|A|C|570
7QP7|1|A|U|571
7QP7|1|A|U|572
7QP7|1|A|U|573
7QP7|1|A|A|574
7QP7|1|A|A|575
7QP7|1|A|A|576
7QP7|1|A|U|577
7QP7|1|A|C|578
7QP7|1|A|C|579
7QP7|1|A|U|580
7QP7|1|A|U|581

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24