HL_7QQ3_006

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7QQ3|1|I|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QQ3_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0774

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7QQ3|1|I|G|194
7QQ3|1|I|A|195
7QQ3|1|I|A|196
7QQ3|1|I|A|197
7QQ3|1|I|C|198
7QQ3|1|I|A|199
7QQ3|1|I|U|200
7QQ3|1|I|C|201

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain f

50S ribosomal protein L28