HL_7QQP_001
3D structure
- PDB id
- 7QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SpCas9 bound to AAVS1 off-target3 DNA substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85603.1
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 304
Unit IDs
7QQP|1|A|A|32
7QQP|1|A|G|33
7QQP|1|A|A|34
7QQP|1|A|A|35
7QQP|1|A|A|36
7QQP|1|A|U|37
Current chains
- Chain A
- AAVS1 sgRNA
Nearby chains
- Chain B
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: