HL_7QR4_003

3D structure

PDB id

7QR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human CPEB3 HDV-like ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.83 Å

Loop

Sequence

GUUCACGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QR4_003 not in the Motif Atlas

Geometric match to HL_7QR4_001

Geometric discrepancy: 0.0002

The information below is about HL_7QR4_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7QR4|1|B|G|19||||4_555
7QR4|1|B|U|20||||4_555
7QR4|1|B|U|21||||4_555
7QR4|1|B|C|22||||4_555
7QR4|1|B|A|23||||4_555
7QR4|1|B|C|24||||4_555
7QR4|1|B|G|25||||4_555
7QR4|1|B|U|26||||4_555
7QR4|1|B|C|27||||4_555

Current chains

Chain B

RNA CPEB3 ribozyme

Nearby chains