HL_7R4X_012

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

7R4X|1|2|U|573

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R4X_012 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2401

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7R4X|1|2|A|569
7R4X|1|2|C|570
7R4X|1|2|U|571
7R4X|1|2|PSU|572
7R4X|1|2|U|573
7R4X|1|2|A|574
7R4X|1|2|A|575
7R4X|1|2|A2M|576
7R4X|1|2|U|577
7R4X|1|2|C|578
7R4X|1|2|C|579
7R4X|1|2|U|580
7R4X|1|2|U|581

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24