HL_7R7A_013

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

7R7A|1|1|U|545, 7R7A|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_013 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3259

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7R7A|1|1|U|541
7R7A|1|1|G|542
7R7A|1|1|C|543
7R7A|1|1|C|544
7R7A|1|1|U|545
7R7A|1|1|C|546
7R7A|1|1|G|547
7R7A|1|1|G|548
7R7A|1|1|U|549
7R7A|1|1|A|550

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L20-A