HL_7R7A_039

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7R7A|1|1|C|1762, 7R7A|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_039 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1562

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7R7A|1|1|C|1759
7R7A|1|1|A|1760
7R7A|1|1|C|1761
7R7A|1|1|C|1762
7R7A|1|1|U|1763
7R7A|1|1|U|1764
7R7A|1|1|U|1765
7R7A|1|1|G|1766

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A