HL_7R7A_045

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7R7A|1|1|U|2842, 7R7A|1|1|A|2845, 7R7A|1|1|U|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_045 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2986

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7R7A|1|1|C|2840
7R7A|1|1|G|2841
7R7A|1|1|U|2842
7R7A|1|1|U|2843
7R7A|1|1|C|2844
7R7A|1|1|A|2845
7R7A|1|1|U|2846
7R7A|1|1|A|2847
7R7A|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains