HL_7R7A_054

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7R7A|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_054 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1133

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7R7A|1|1|G|3303
7R7A|1|1|U|3304
7R7A|1|1|A|3305
7R7A|1|1|U|3306
7R7A|1|1|A|3307
7R7A|1|1|C|3308
7R7A|1|1|G|3309
7R7A|1|1|A|3310
7R7A|1|1|C|3311

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A