HL_7RQ8_058

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

7RQ8|1|1A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQ8_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0468

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7RQ8|1|1A|C|2404
7RQ8|1|1A|G|2405
7RQ8|1|1A|U|2406
7RQ8|1|1A|G|2407
7RQ8|1|1A|U|2408
7RQ8|1|1A|G|2409
7RQ8|1|1A|G|2410
7RQ8|1|1A|A|2411
7RQ8|1|1A|A|2412
7RQ8|1|1A|G|2413

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15