HL_7RQ9_071
3D structure
- PDB id
- 7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7RQ9_071 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0874
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7RQ9|1|1a|U|12
7RQ9|1|1a|U|13
7RQ9|1|1a|U|14
7RQ9|1|1a|G|15
7RQ9|1|1a|A|16
7RQ9|1|1a|U|17
7RQ9|1|1a|C|18
7RQ9|1|1a|C|19
7RQ9|1|1a|U|20
7RQ9|1|1a|G|21
7RQ9|1|1a|G|22
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1e
- 30S ribosomal protein S5
- Chain 1l
- 30S ribosomal protein S12
- Chain 1v
- mRNA
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