HL_7RQ9_124

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

7RQ9|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQ9_124 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0948

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7RQ9|1|2A|G|382
7RQ9|1|2A|U|383
7RQ9|1|2A|U|384
7RQ9|1|2A|C|385
7RQ9|1|2A|G|386
7RQ9|1|2A|U|387
7RQ9|1|2A|G|388
7RQ9|1|2A|G|389
7RQ9|1|2A|A|390
7RQ9|1|2A|G|391
7RQ9|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15