HL_7RQ9_172

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

7RQ9|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQ9_172 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.352

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

7RQ9|1|2A|C|2527
7RQ9|1|2A|U|2528
7RQ9|1|2A|G|2529
7RQ9|1|2A|A|2530
7RQ9|1|2A|A|2531
7RQ9|1|2A|G|2532
7RQ9|1|2A|A|2533
7RQ9|1|2A|A|2534
7RQ9|1|2A|G|2535
7RQ9|1|2A|G|2536

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6