HL_7RQA_220

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQA_220 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0853

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7RQA|1|1A|G|2304
7RQA|1|1A|A|2305
7RQA|1|1A|C|2306
7RQA|1|1A|G|2307
7RQA|1|1A|G|2308
7RQA|1|1A|A|2309
7RQA|1|1A|A|2310
7RQA|1|1A|A|2311
7RQA|1|1A|U|2312

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5