HL_7RQB_062

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQB_062 not in the Motif Atlas

Homologous match to HL_8VTW_061

Geometric discrepancy: 0.1049

The information below is about HL_8VTW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7RQB|1|1A|C|2551
7RQB|1|1A|OMU|2552
7RQB|1|1A|G|2553
7RQB|1|1A|U|2554
7RQB|1|1A|U|2555
7RQB|1|1A|C|2556
7RQB|1|1A|G|2557

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1w

A-site Aminoacyl-tRNA Analog