HL_7RQB_216

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7RQB|1|1A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQB_216 not in the Motif Atlas

Homologous match to HL_9DFE_027

Geometric discrepancy: 0.3825

The information below is about HL_9DFE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQB|1|1A|C|1064
7RQB|1|1A|U|1065
7RQB|1|1A|U|1066
7RQB|1|1A|A|1067
7RQB|1|1A|G|1068
7RQB|1|1A|A|1069
7RQB|1|1A|A|1070
7RQB|1|1A|G|1071
7RQB|1|1A|C|1072
7RQB|1|1A|A|1073
7RQB|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16