HL_7RQC_150

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(OMC)G

Length

13 nucleotides

Bulged bases

7RQC|1|2A|A|1913, 7RQC|1|2A|C|1914, 7RQC|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQC_150 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1238

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQC|1|2A|C|1909
7RQC|1|2A|G|1910
7RQC|1|2A|PSU|1911
7RQC|1|2A|A|1912
7RQC|1|2A|A|1913
7RQC|1|2A|C|1914
7RQC|1|2A|5MU|1915
7RQC|1|2A|A|1916
7RQC|1|2A|PSU|1917
7RQC|1|2A|A|1918
7RQC|1|2A|A|1919
7RQC|1|2A|OMC|1920
7RQC|1|2A|G|1921

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Ribosome-associated inhibitor A