HL_7RQD_134

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AGGUGGCUUAGAAGCAGCCAUCCU

Length

24 nucleotides

Bulged bases

7RQD|1|2A|G|1068

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2A|A|1057
7RQD|1|2A|G|1058
7RQD|1|2A|G|1059
7RQD|1|2A|U|1060
7RQD|1|2A|G|1062
7RQD|1|2A|G|1063
7RQD|1|2A|C|1064
7RQD|1|2A|U|1065
7RQD|1|2A|U|1066
7RQD|1|2A|A|1067
7RQD|1|2A|G|1068
7RQD|1|2A|A|1069
7RQD|1|2A|A|1070
7RQD|1|2A|G|1071
7RQD|1|2A|C|1072
7RQD|1|2A|A|1073
7RQD|1|2A|G|1074
7RQD|1|2A|C|1075
7RQD|1|2A|C|1076
7RQD|1|2A|A|1077
7RQD|1|2A|U|1078
7RQD|1|2A|C|1079
7RQD|1|2A|C|1080
7RQD|1|2A|U|1081

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25