HL_7RQE_036

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7RQE|1|1A|U|1396, 7RQE|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQE_036 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0395

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7RQE|1|1A|G|1389
7RQE|1|1A|U|1390
7RQE|1|1A|U|1391
7RQE|1|1A|A|1392
7RQE|1|1A|A|1393
7RQE|1|1A|U|1394
7RQE|1|1A|A|1395
7RQE|1|1A|U|1396
7RQE|1|1A|U|1397
7RQE|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23