HL_7RQE_134

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

7RQE|1|2A|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQE_134 not in the Motif Atlas

Homologous match to HL_8VTW_029

Geometric discrepancy: 0.5794

The information below is about HL_8VTW_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQE|1|2A|G|1091
7RQE|1|2A|C|1092
7RQE|1|2A|G|1093
7RQE|1|2A|U|1094
7RQE|1|2A|A|1095
7RQE|1|2A|A|1096
7RQE|1|2A|U|1097
7RQE|1|2A|A|1098
7RQE|1|2A|G|1099
7RQE|1|2A|C|1100

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6