HL_7RR5_013

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_013 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.074

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7RR5|1|C1|A|357
7RR5|1|C1|G|358
7RR5|1|C1|U|359
7RR5|1|C1|G|360
7RR5|1|C1|A|361
7RR5|1|C1|U|362

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

RPL4A isoform 1

Chain Lj

Ribosomal protein L37

Chain Ll

60S ribosomal protein L39