HL_7RR5_026

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

7RR5|1|C1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_026 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.1936

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7RR5|1|C1|C|1023
7RR5|1|C1|G|1024
7RR5|1|C1|A|1025
7RR5|1|C1|A|1026
7RR5|1|C1|A|1027
7RR5|1|C1|U|1028
7RR5|1|C1|G|1029

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

RPL11B isoform 1

Chain SP

RPS15 isoform 1

Chain SS

40S ribosomal protein S18-B