HL_7RR5_038

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

7RR5|1|C1|A|1602, 7RR5|1|C1|U|1606, 7RR5|1|C1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_038 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1359

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|G|1599
7RR5|1|C1|U|1600
7RR5|1|C1|U|1601
7RR5|1|C1|A|1602
7RR5|1|C1|A|1603
7RR5|1|C1|G|1604
7RR5|1|C1|A|1605
7RR5|1|C1|U|1606
7RR5|1|C1|U|1607
7RR5|1|C1|C|1608

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LX

60S ribosomal protein L25

Chain Lg

60S ribosomal protein L34-A