HL_7RR5_042

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

7RR5|1|C1|C|1762, 7RR5|1|C1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_042 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3547

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7RR5|1|C1|C|1759
7RR5|1|C1|A|1760
7RR5|1|C1|C|1761
7RR5|1|C1|C|1762
7RR5|1|C1|U|1763
7RR5|1|C1|U|1764
7RR5|1|C1|U|1765
7RR5|1|C1|G|1766

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LU

60S ribosomal protein L22-A