HL_7RR5_054

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7RR5|1|C1|A|2372, 7RR5|1|C1|A|2373, 7RR5|1|C1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0936

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|G|2369
7RR5|1|C1|G|2370
7RR5|1|C1|G|2371
7RR5|1|C1|A|2372
7RR5|1|C1|A|2373
7RR5|1|C1|C|2374
7RR5|1|C1|G|2375
7RR5|1|C1|G|2376
7RR5|1|C1|G|2377
7RR5|1|C1|C|2378

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain Le

RPL32 isoform 1