HL_7RR5_089

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_089 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.142

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7RR5|1|C2|A|520
7RR5|1|C2|A|521
7RR5|1|C2|U|522
7RR5|1|C2|G|523
7RR5|1|C2|U|524
7RR5|1|C2|A|525
7RR5|1|C2|A|526
7RR5|1|C2|A|527
7RR5|1|C2|U|528
7RR5|1|C2|A|529
7RR5|1|C2|C|530
7RR5|1|C2|C|531
7RR5|1|C2|U|532

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24