HL_7RR5_093

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7RR5|1|C2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_093 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1163

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7RR5|1|C2|U|764
7RR5|1|C2|G|765
7RR5|1|C2|U|766
7RR5|1|C2|U|767
7RR5|1|C2|C|768
7RR5|1|C2|A|769
7RR5|1|C2|A|770
7RR5|1|C2|A|771
7RR5|1|C2|G|772

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24