HL_7RYF_009

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

7RYF|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYF_009 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.1188

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7RYF|1|A|C|307
7RYF|1|A|U|308
7RYF|1|A|G|309
7RYF|1|A|G|310
7RYF|1|A|G|311
7RYF|1|A|A|312
7RYF|1|A|A|313
7RYF|1|A|G|314

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24