HL_7RYF_052

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYF_052 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1631

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7RYF|1|A|U|2320
7RYF|1|A|A|2321
7RYF|1|A|U|2322
7RYF|1|A|A|2323
7RYF|1|A|A|2324
7RYF|1|A|A|2325
7RYF|1|A|G|2326
7RYF|1|A|G|2327

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L27