HL_7RYG_075

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYG_075 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0872

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7RYG|1|a|G|316
7RYG|1|a|A|317
7RYG|1|a|C|318
7RYG|1|a|U|319
7RYG|1|a|G|320
7RYG|1|a|A|321
7RYG|1|a|G|322
7RYG|1|a|A|323
7RYG|1|a|C|324
7RYG|1|a|A|325
7RYG|1|a|C|326
7RYG|1|a|G|327
7RYG|1|a|G|328
7RYG|1|a|C|329

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20