HL_7RYH_017

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

7RYH|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYH_017 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.1148

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7RYH|1|A|U|564
7RYH|1|A|U|565
7RYH|1|A|U|566
7RYH|1|A|U|567
7RYH|1|A|G|568
7RYH|1|A|U|569
7RYH|1|A|A|570
7RYH|1|A|U|571
7RYH|1|A|A|572
7RYH|1|A|A|573

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L15

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32