HL_7S1G_011

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1G_011 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1039

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7S1G|1|C|A|320
7S1G|1|C|A|321
7S1G|1|C|C|322
7S1G|1|C|U|323
7S1G|1|C|G|324
7S1G|1|C|A|325
7S1G|1|C|G|326
7S1G|1|C|A|327
7S1G|1|C|C|328
7S1G|1|C|A|329
7S1G|1|C|C|330
7S1G|1|C|G|331
7S1G|1|C|G|332
7S1G|1|C|U|333

Current chains

Chain C

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20

Chain x

30S ribosomal protein S16