HL_7S1I_107

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7S1I|1|C|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1I_107 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3909

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7S1I|1|C|C|840
7S1I|1|C|C|841
7S1I|1|C|U|842
7S1I|1|C|U|843
7S1I|1|C|G|844
7S1I|1|C|A|845
7S1I|1|C|G|846

Current chains

Chain C

16S rRNA

Nearby chains

Chain z

30S ribosomal protein S18