HL_7S1J_008

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1053

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7S1J|1|C|A|320
7S1J|1|C|A|321
7S1J|1|C|C|322
7S1J|1|C|U|323
7S1J|1|C|G|324
7S1J|1|C|A|325
7S1J|1|C|G|326
7S1J|1|C|A|327
7S1J|1|C|C|328
7S1J|1|C|A|329
7S1J|1|C|C|330
7S1J|1|C|G|331
7S1J|1|C|G|332
7S1J|1|C|U|333

Current chains

Chain C

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20

Chain x

30S ribosomal protein S16