HL_7S1J_012

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7S1J|1|C|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1488

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7S1J|1|C|G|462
7S1J|1|C|U|463
7S1J|1|C|U|464
7S1J|1|C|A|465
7S1J|1|C|A|466
7S1J|1|C|U|467
7S1J|1|C|A|468
7S1J|1|C|C|469
7S1J|1|C|C|470

Current chains

Chain C

16S rRNA

Nearby chains