HL_7S1J_030

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

7S1J|1|C|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_030 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.103

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

7S1J|1|C|G|1356
7S1J|1|C|A|1357
7S1J|1|C|U|1358
7S1J|1|C|C|1359
7S1J|1|C|A|1360
7S1J|1|C|G|1361
7S1J|1|C|A|1362
7S1J|1|C|A|1363
7S1J|1|C|U|1364
7S1J|1|C|G|1365
7S1J|1|C|C|1366

Current chains

Chain C

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S9

Chain q

30S ribosomal protein S10

Chain v

30S ribosomal protein S14