HL_7S1J_058

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

7S1J|1|I|U|958, 7S1J|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_058 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7S1J|1|I|G|954
7S1J|1|I|PSU|955
7S1J|1|I|G|956
7S1J|1|I|C|957
7S1J|1|I|U|958
7S1J|1|I|A|959
7S1J|1|I|A|960
7S1J|1|I|C|961
7S1J|1|I|G|962
7S1J|1|I|U|963

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

50S ribosomal protein L16