HL_7S1J_060

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

7S1J|1|I|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_060 not in the Motif Atlas

Homologous match to HL_7RQB_029

Geometric discrepancy: 0.5556

The information below is about HL_7RQB_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7S1J|1|I|G|1063
7S1J|1|I|C|1064
7S1J|1|I|U|1065
7S1J|1|I|U|1066
7S1J|1|I|A|1067
7S1J|1|I|G|1068
7S1J|1|I|A|1069
7S1J|1|I|A|1070
7S1J|1|I|G|1071
7S1J|1|I|C|1072
7S1J|1|I|A|1073
7S1J|1|I|G|1074
7S1J|1|I|C|1075

Current chains

Chain I

23S rRNA

Nearby chains