HL_7S1J_082

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

7S1J|1|I|A|2031, 7S1J|1|I|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_082 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0699

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

7S1J|1|I|G|2027
7S1J|1|I|U|2028
7S1J|1|I|G|2029
7S1J|1|I|6MZ|2030
7S1J|1|I|A|2031
7S1J|1|I|G|2032
7S1J|1|I|A|2033
7S1J|1|I|U|2034
7S1J|1|I|G|2035
7S1J|1|I|C|2036

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain Z

Ribosomal protein L21

Chain i

50S ribosomal protein L32