HL_7S1J_087

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_087 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1561

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7S1J|1|I|G|2303
7S1J|1|I|G|2304
7S1J|1|I|U|2305
7S1J|1|I|C|2306
7S1J|1|I|G|2307
7S1J|1|I|G|2308
7S1J|1|I|A|2309
7S1J|1|I|C|2310
7S1J|1|I|A|2311
7S1J|1|I|U|2312
7S1J|1|I|C|2313

Current chains

Chain I

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L5