HL_7S1K_030

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

7S1K|1|C|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_030 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2433

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7S1K|1|C|U|1165
7S1K|1|C|G|1166
7S1K|1|C|A|1167
7S1K|1|C|U|1168
7S1K|1|C|A|1169
7S1K|1|C|A|1170
7S1K|1|C|A|1171

Current chains

Chain C

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S21

Chain D

30S ribosomal protein S2