HL_7S1K_044

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7S1K|1|I|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_044 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1309

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7S1K|1|I|C|305
7S1K|1|I|U|306
7S1K|1|I|G|307
7S1K|1|I|G|308
7S1K|1|I|A|309
7S1K|1|I|A|310
7S1K|1|I|A|311
7S1K|1|I|G|312

Current chains

Chain I

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L24