HL_7S1K_062

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_062 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1011

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7S1K|1|I|G|978
7S1K|1|I|A|979
7S1K|1|I|A|980
7S1K|1|I|A|981
7S1K|1|I|C|982
7S1K|1|I|A|983
7S1K|1|I|A|984
7S1K|1|I|C|985

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain Z

Ribosomal protein L21

Chain h

50S ribosomal protein L30