HL_7S1K_070

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7S1K|1|I|U|1396, 7S1K|1|I|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_070 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1386

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7S1K|1|I|G|1389
7S1K|1|I|U|1390
7S1K|1|I|U|1391
7S1K|1|I|A|1392
7S1K|1|I|A|1393
7S1K|1|I|U|1394
7S1K|1|I|A|1395
7S1K|1|I|U|1396
7S1K|1|I|U|1397
7S1K|1|I|C|1398

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23