HL_7S1K_103

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7S1K|1|I|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_103 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0701

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7S1K|1|I|G|2819
7S1K|1|I|A|2820
7S1K|1|I|A|2821
7S1K|1|I|G|2822
7S1K|1|I|A|2823
7S1K|1|I|C|2824
7S1K|1|I|G|2825
7S1K|1|I|A|2826
7S1K|1|I|C|2827

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain V

50S ribosomal protein L17